Appendix User Bibliography




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Language, Cognition, and Social Behavior


SES050005

  1. Kim, Sung-youn. 2005. A Model of Political Information Processing: The Dynamics of Candidate Evaluation and Strategic Behaviors in Social Dilemma Games. Unpublished Dissertation, Stony Brook University.

Integrative Biology and Neuroscience


IBN050003

  1. Nagel, K., T. Sharpee, and A.J. Doupe, Effects of stimulus statistics on temporal processing in the zebra finch auditory forebrain. Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. Online, 2005. 616.3.

  2. Sharpee, T., K. Nagel, and A.J. Doupe, Essential features of temporal processing in the songbird auditory processing. Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. Online, 2005. 78.16.

  3. Sharpee, T., H. Sugihara, A. Kurdansky, S. Rebrik, M. Stryker, and K. D. Miller, Nature (in press, article). (2006)

  4. J. Victor, F. Mechler, Michael Repucci, Keith Purpura, Tatyana Sharpee, "Responses of V1 neurons to two-dimensional Hermite Functions". Journal of Neurophysiology 95, pp. 379-400, (2006).

Neuroscience Biology


IBN020002

  1. Santamaria F., Bower J. M. Background synaptic activity modulates the response of a modeled Purkinje cell to paired afferent input. J. of Neurophys. 93: 237-250 (2005).

Physiology and Behavior


MCB020003

  1. Fenton FH, Cherry EM, Gray RA, Hastings HM, Evans SJ. Fibrillation without alternans in porcine ventricles. Heart Rhythm 2005; 2 (Supplement): S301-S302.

IBN060008

  1. E. Griffth, Simulating the blood-muscle-valve mechanics of the heart by an adaptive and parallel version of the immersed boundary method, Ph.D. thesis, Courant Institute of Mathematical Sciences, New York University, also available from http://www.math.nyu.edu/~griffith (2005).

  1. B.E. Griffith. Simulating the blood-muscle-valve mechanics of the heart by an adaptive and parallel version of the immersed boundary method. PhD thesis, Courant Institute of Mathematical Sciences, New York University, 2005. Also available from http://www.math.nyu.edu/~griffith.

  2. B.E. Griffith, Simulating the blood-muscle-valve mechanics of the heart by an adaptive and parallel version of the immersed boundary method, Ph.D. Thesis. 2005, Courant Institute of Mathematical Sciences, New York University: New York, NY.

Atmospheric Sciences


ATM040001

  1. Ashour-Abdalla, M., J. M. Bosqued, M. El-Alaoui, V. Peroomian, L. M. Zelenyi, R. J. Walker, and J. Wright (2005), A stochastic sea: The source of plasma sheet boundary layer ion structures observed by Cluster, J. Geophys. Res., 110, A12221, doi:10.1029/2005JA011183

  2. El-Alaoui, M., M. Ashour-Abdalla, and R. Richard, Meso-scale current sheet structures: Results from global MHD simulations, Cluster Double Star Symposium 5th Anniversary of Cluster in Space, Noordwijk, The Netherlands, September 19-23, 2005 (Abstract book, pg. 134)

  3. El-Alaoui, M., M. Ashour-Abdalla, R.L. Richard, Meso-scale current sheet structures in MHD simulations, Fall AGU Meeting, San Francisco, CA, December 5-9, 2005

  4. Thompson, S. M., M. G. Kivelson, M. El-Alaoui, A. Balogh, H. Réme, and L. M. Kistler (2006), Bifurcated current sheets: Statistics from Cluster magnetometer measurements, J. Geophys. Res., 111, A03212, doi:10.1029/2005JA011009

MCA99S004

  1. Gondarenko N. A., P. N. Guzdar, Nonlinear 3D simulations of mesoscale structuring by multiple drives in high latitude plasma patches, in preparation to J. Geophys. Res..

  2. Gondarenko N. A., P. N. Guzdar, Simulations of the scintillation-producing irregularities in high-latitude plasma patches, in preparation to Geophys. Res. Lett..

  3. Gondarenko, N. A., and P. N. Guzdar (2004a), Density and electric field fluctuations associated with the gradient drift instability in the high-latitude ionosphere, Geophys. Res. Lett., 31, L11802, doi:10.1029/2004GL019703.

  4. Gondarenko, N. A., and P. N. Guzdar (2004b), Plasma patch structuring by the nonlinear evolution of the gradient drift instability in the high-latitude ionosphere, J. Geophys. Res., 109, A09301, doi:10.1029/2004JA010504.

ATM060003

  1. Kanamitsu, M., H. Kanamaru, Cui, Y., H. Juang. 2005. Parallel Implementation of theRegional Spectral Atmospheric Model. Scripps Institution of Oceanography, University of California at San Diego, and National Oceanic and Atmospheric Administration for the California Energy Commission, PIER Energy-Related Environmental Research. CEC-500-2005-014.

Meteorology


MCA95C006

  1. Dawson, D. T., II and M. Xue, 2006: Numerical forecasts of the 15-16 June 2002 Southern Plains severe MCS: Impact of mesoscale data and cloud analysis. Mon. Wea. Rev., In press.

  2. Droegemeier, K. K., K. Brewster, M. Xue, D. Weber, D. Gannon, B. Plale, D. Reed, L. Ramakrishnan, J. Alameda, R. Wilhelmson, T. Baltzer, B. Domenico, D. Murray, M. Ramamurthy, A. Wilson, R. Clark, S. Yalda, S. Graves, R. Ramachandra, J. Rushing, E. Joseph, and V. Morris, 2005: Service-oriented environments for dynamically interacting with mesoscale weather. Computing in Science and Engineering, 7, 12-27.

  3. Gao, J. and M. Xue, 2006: An efficient dual-resolution approach for ensemble data assimilation and tests with the assimilation of Doppler radar data. Mon. Wea. Rev., To be submitted.

  4. Gao, J., M. Xue, S. Y. Lee, K. K. Droegemeier, and A. Shapiro, 2006: A three-dimensional variational method for velocity retrievals from single-Doppler radar observations on supercell storms. Meteo. Atmos. Phys., In press.

  5. Godfrey, E. S., M. Tong, M. Xue, and K. K. Droegemeier, 2005: Assimilation of simulated network radar data of veried storm types using EnSRF for convective storm analysis and forecasts. Extended abstract, 17th Conf. Num. Wea. Pred., Washingtong DC, Amer. Meteor. Soc., 13A.1.

  6. Hu, M., M. Xue, and K. Brewster, 2006a: 3DVAR and cloud analysis with WSR-88D level-II data for the prediction of Fort Worth tornadic thunderstorms. Part I: Cloud analysis and its impact. Mon. Wea. Rev., 134, 675-698.

  7. Hu, M., M. Xue, J. Gao, and K. Brewster, 2006b: 3DVAR and cloud analysis with WSR-88D level-II data for the prediction of Fort Worth tornadic thunderstorms. Part II: Impact of radial velocity analysis via 3DVAR. Mon. Wea. Rev., 134, 699-721.

  8. Jung, Y., M. Xue, G. Zhang, and J. Straka, 2006: Assimilation of polarimetric radar data using ensemble Kalman filter: Direct assimilation with simulated data. J. Atmos. Sci., To be submitted.

  9. Liu, H. and M. Xue, 2006a: Prediction of convective initiation and storm evolution on 12 June 2002 during IHOP. Part I: Control simulation and sensitivity experiments. Mon. Wea. Rev., To be submitted.

  10. Liu, H., M. Xue, R. J. Purser, and D. F. Parrish, 2006a: Retrieval of moisture from GPS slantpath water vapor observations using 3DVAR with isotropic and anisotropic recursive filters. Mon. Wea. Rev., Accepted.

  11. Liu, S., M. Xue, and Q. Xu, 2006b: Using wavelet analysis to detect tornadoes from Doppler radar radial-velocity observations. J. Atmos. Ocean Tech., Conditionally accepted.

  12. Lyons, E. J., V. Lakamraju, K. Brewster, M. Xue, and K. D. Hondl, 2005: An end-to-end emulation of the CASA radar network 32nd Conf. Radar Meteor., Albuquerque, NM, Amer. Meteor. Soc., CDROM 14R.3.

  13. Martin, W. J. and M. Xue, 2006a: Evolved and random perturbation methods for calculating model sensitivities and covariances. Mon. Wea. Rev., To be submitted.

  14. May, R. M., M. I. Biggerstaff, and M. Xue, 2006: A Doppler radar emulator and its application to the study of tornadic signature detectability. J. Atmos. Ocean. Tech., Submitted.

  15. Potvin, C. K., A. Shapiro, T.-y. Yu, and M. Xue, 2006: Using a low-order model to characterize tornadoes in multiple Doppler radar data. Preprint, 22nd Int. Conf. Interactive Info. Proc. Sys. Meteor. Oceanogr. Hydro, Atlanta, Amer. Meteor. Soc., CDROM 11.5.

  16. Snook, N. and M. Xue, 2006: Sensitivity of tornadogenesis in very-high-resolution numerical simulations to variations in model microphysical parameters. J. Atmos Sci., To be submitted.

  17. Tong, M. and M. Xue, 2006a: Simultaneous estimation of microphysical parameters and atmospheric state with radar data and ensemble square-root Kalman filter. Part I: Sensitivity analysis and parameter identifiability J. Atmos. Sci., Submitted.

  18. Xue, M. and H. Liu, 2006: Prediction of convective initiation and storm evolution on 12 June 2002 during IHOP. Part II: High-resolution simulation and mechanisms of convective initiation, Submitted.

  19. Xue, M. and W. J. Martin, 2006a: A high-resolution modeling study of the 24 May 2002 case during IHOP. Part II: Horizontal convective rolls and convective initiation. Mon. Wea. Rev., 134, 172–191.

  20. Xue, M., M. Tong, and K. K. Droegemeier, 2006a: An OSSE framework based on the ensemble square-root Kalman filter for evaluating impact of data from radar networks on thunderstorm analysis and forecast. J. Atmos. Ocean Tech., 23, 46–66.

  21. Xue, M., S. Liu, and T. Yu, 2006b: Variational analysis of over-sampled dual-Doppler radial velocity data and application to the analysis of tornado circulations. J. Atmos. Ocean Tech., Accepted.

  22. Zhou, Y., J. Gao, K. Brewster, M. Hu, and M. Xue, 2005: Combining phase error correction and 3DVAR in storm-scale data assimilation. Extended Abstract, 17th Conf. Num. Wea. Pred., Washington DC, Amer. Meteor. Soc., P1.75.

Magnetospheric Physics


ATM060004

  1. Schriver, D., M. Ashour-Abdalla, L. Zelenyi, T. Gombosi, A. Ridley, D. De Zeeuw, G. Toth, and G. Monostori, Modeling the kinetic transport of electrons through the Earth’s global magnetosphere, Proceedings of the 7’th ISSS (International School/Symposium for Space Simulations), RISH, Kyoto, Japan, 2005.

ATM060025

  1. Peroomian, V., M. El-Alaoui, M. Ashour-Abdalla, and L. M. Zelenyi, The access of ionospheric O+ ions to the plasma sheet during the September 24-25, 1998 magnetic storm, J. Adv. Space Res., in press, 2006a.

  2. Peroomian, V., M. El-Alaoui, M. Ashour-Abdalla, and L. M. Zelenyi, Ion dynamics during the September 24-25, 1998 magnetic storm, Proceedings of the 2005 Solar Extreme Events Conference, in press, 2006b

  3. Peroomian, V., M. El-Alaoui, M. Ashour-Abdalla, and L. M. Zelenyi, The dynamics of ionospheric O+ ions in the magnetosphere during the September 24-25, 1998 magnetic storm, J. Geophys. Res., under review, 2006c

  4. Peroomian, V., M. El-Alaoui, M. Ashour-Abdalla, and L. M. Zelenyi, A comparison of solar wind and ionospheric plasma contributions to the September 24-25, 1998 magnetic storm, J. Atmos. Sol.-Terr. Phys., under review, 2006d

CCR040023

  1. K. Perumalla, “Musik – A Micro-Kernel for Parallel/Distributed Simulation Systems,” Workshop on Principles of Advanced and Distributed Simulation, June 2005.

  2. K. Perumalla, “Scalable and Flexible Parallel/Distributed Simulation Systems: A Micro-Kernel Approach,” submitted to IEEE Transactions on Parallel and Distributed Systems, 2005.

  3. K. Perumalla, R. Fujimoto, S. Pande, H. Karimabadi, J. Driscoll and Y. Omelchenko, “Virtual Simulator: An Infrastructure for Design and Performance-Prediction of Massively Parallel Codes,” American Geophysical Union (AGU) 86(52), Fall Meeting Supplement, Abstract SM13A-0322, December 2005.

  4. K. Perumalla, R. Fujimoto, P. Thakare, S. Pande, H. Karimabadi, Y. Omelchenko and J. Driscoll, “Performance Prediction of Large-scale Parallel Discrete Event Models of Physical Systems,” Proceedings of the 2005 Winter Simulation Conference, December 2005.

MCA03S019

  1. Birn, J., K. Galsgaard, M. Hesse, M. Hoshino, J. Huba, G. Lapenta, P.L. Pritchett, K. Schindler, L. Yin, J. Buchner, T. Neukirch, and E.R. Priest, Forced magnetic reconnection, Geophys. Res. Lett., 32, L06105, doi:10.1029/2004GL022058, 2005.

  2. Pritchett, P.L., Externally driven magnetic reconnection in the presence of a normal magnetic field, J. Geophys. Res., 110, A05209, doi:10.1029/2004JA010948, 2005a.

  3. Pritchett, P.L., The “Newton Challenge": Kinetic aspects of forced magnetic reconnection, J. Geophys. Res., 110, A10213, doi:10.1029/2005JA011228, 2005c.

  4. Pritchett, P.L., Relativistic electron production during driven magnetic reconnection, Geophys. Res. Lett., submitted, 2005d.

  5. Pritchett, P.L., and F.V. Coroniti, A kinetic interchange instability in the magnetotail, J. Geophys. Res., submitted, 2006.

Solar Terrestrial Research


ATM010004

  1. L. Muschietti and B. Lembege, Electron cyclotron microinstability in the foot of a perpendicular shocks: A self-consistent PIC simulation, Advances in Space Research 37, 483-493, 2006. Doi:10.1016/j.asr.2005.03.077

  2. L. Muschietti and B. Lembege, Microturbulence in the foot of a supercritical shock: evidence of electron cyclotron instability, paper COM8-01166 in Proceedings for the XXVIII URSI General Assembly, New Dehli, 2005.

MCA03S014

  1. Merkin, V. G., G. Milikh, K. Papadopoulos, J. Lyon, Y. S. Dimant, A. S. Sharma, C. Goodrich, and M. Wiltberger (2005), Effect of anomalous electron heating on the transpolar potential in the LFM global MHD model, Geophys. Res. Lett., 32, L22101, doi:10.1029/2005GL023315

  2. Merkin, V. G.., A. S. Sharma}, K. Papadopoulos, G. Milikh, J. Lyon, and C. Goodrich, Relationship between the ionospheric conductance, field aligned current, and magnetopause geometry: Global MHD simulations, Planetary and Space Science, 53, 873-879, doi:10.1016/j.pss.2005.04.001.
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