Positions, training & advisory roles

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George M. Church CV Oct 2010

Positions, training & advisory roles

1976 National Science Foundation Program Project Grant Review Committee

1974 BA Duke University, Durham, NC; Zoology & Chemistry

1984 PhD Harvard University, Cambridge, MA; Biochem. & Mol. Biol.

1984 Scientist, Biogen Research Corporation, Cambridge, MA

1985-1986 Research Fellow, Anatomy, Univ. Calif., San Francisco, CA

1986-1998 Assistant/Associate Professor of Genetics, Harvard Medical School, Boston, MA

1997-present Director of the Lipper Center for Computational Genetics, Boston, MA

1998-present Professor of Genetics, Harvard Medical School, Boston, MA

2002-present Director of the Harvard/MIT DOE Genomes-to-Life Center

2004-present Director of the Harvard/MIT/WashU NHGRI CEGS

2006-present Broad Inst. of Harvard & MIT (1990 Genome Center co-founder)

2008-present Harvard Wyss Inst. for Biologically Inspired Engineering (co-founder)

1988,1992,1994 Department of Energy Genome Project Grant Review Committee

1990 NIH Genome Study Section Grant Review

1990 Co-founder of MIT, Stanford, & GTC Genome Sequencing Centers

1994-1997 National Center for Human Genome Research Review Committee

2001-present NIH BISTI, Pioneer, grant review committees, NHLBI BEE, NAS committees

Editorial Boards Nature/EMBO-MSB, Genome Biology, Omics, BioMedNet

Editorial Reviewer Nature (&NG, NB), Science, PNAS, Genome Research, NAR

Scientific Boards: LS9, Gen9, Knome, Joule, Genomatica, 23andme, CGI, Sigma-Aldrich, Halcyon

Honors & awards:

1974-1975 National Science Foundation Predoctoral Fellow

1985-1986 Life Sciences Research Foundation Fellow

1986-1997 Howard Hughes Medical Institute

2008 World Economic Forum Technology Pioneer Award (LS9)

2009 American Society for Microbiology Biotechnology Research Award

2010 US Presidential Green Chemistry Award (LS9)

2010 International Steven Hoogendijk Award

2011 Franklin Institute Bower Prize for Achievement in Science

Publications (see also http://arep.med.harvard.edu; lab members in bold)

229. Strong M, Sandgren A, Galagan JE, Borowsky M, Church GM, Murray MB (2010) Structural Meta-Analysis of the Mycobacterium tuberculosis Antibiotic Resistome (in prep)

228. Schwartz D and Church GM (2010) Collection and Motif-Based Prediction of Phosphorylation Sites in Human Viruses. Science Signaling 3(137):rs2.

227. Shee K, Strong M, Guido NJ, Lue R, Church GM, Viel A (2010) Research, Collaboration, and Open Science using Web 2.0 (in prep).

226. Tolonen AC, Haas W, Chilaka AC, Aach J, Gygi SP, Church GM (2010) An integrated proteomic-based strategy to optimize cellulosic fermentation (submitted)

225. Kosuri S, Eroshenko N, LeProust E, Super M, Way J, Li JB, Church GM (2010) A Scalable Gene Synthesis Platform Using High-Fidelity DNA Microchips. (submitted).

224. Matzas M, Stdhler PF, Kefer N, Siebelt N, Boisguirin V, Leonard JT, Keller A, Stdhler CF, Hdberle P, Gharizadeh B, Babrzadeh F, Church GM (2010) The Coalescence of the Next Generation of DNA Reading and Writing (submitted)

223. Vigneault F, Woods M, Buzon M, Li C, Pereyra F, Church G, Martinez-Picado J, Rosenberg ES, Telenti A, Yu XG, Lichterfeld M (2010) Transcriptional profiling of CD4 T cells identifies distinct subgroups of HIV-1 elite controllers (submitted).

222. Mosberg JA, Lajoie MJ, Church GM (2010) Lambda Red Recombination of Double-Stranded DNA in Escherichia coli Proceeds Through a Fully Single-Stranded Intermediate. Genetics 10.1534/genetics.110.120782

221. Robertson DE, Jacobson S, Morgan F, Berry D, Church GM, Afeyan N (2010) A New Dawn for Industrial Photosynthesis. An Evaluation of Photosynthetic Efficiencies for Production of Liquid Fuels and Chemicals (submitted).

220. Isaacs FJ, Carr PA, Wang HH, Sterling B, Lajoie MJ, Kraal L, Tolonen A, Reppas NB, Emig CJ, Bang D, Hwang SJ, Jacobson JM, Church GM (2010) Genome-wide Codon Replacement Using Synthetic Oligonucleotides and Engineered Conjugation (in revision)

219. Carr PA, Wang HH, Sterling B, Isaacs FJ, Xu G, Church GM, Jacobson JM (2010) An Oligonucleotide Co-selection Mechanism Enables Multiplex Genome Engineering (in revision)

218. Loh YH, Hartung O, Li H, Guo C, Sahalie JM, Manos PD,Urbach A, Heffner GC,Grskovic M, Vigneault F, Lensch MW, Park IH,Agarwal S, Church GM, Collins JJ, Irion S, Daley GQ. (2010) Reprogramming of T Cells from Human Peripheral Blood. Cell Stem Cell Jul 2;7(1):15-9.

217. Umbarger MA, Wright MA, Porreca GJ, Bay D, Toro E, Shapiro L, Marti-Renom MA, Dekker J, Church GM (2010) The 3D Architecture of a Bacterial Genome. (submitted)

216. Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D,Neff NF ,Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB (2010) Clinical assessment incorporating a personal genome. Lancet 375: 1525-35

215. Sommer MOA, Krueger AS, Hsu C, Rampuria A, Borisy AA, Church GM, Lehar J, Dantas G (2010, in revision)

214. Krueger AS, Sommer MOA, Hoffstrom B, Hsu C, Rampuria A, Borisy AA, Church GM, Dantas G, Lehar J (2010, in revision)

213. Church G (2010) Life after the synthetic cell. Nature May 27;465(7297):422-4.

212. Fabsitz RR, McGuire A, Sharp RR, Hudson K, Pandey M, Beskow LM, Biesecker LG, Bookman E, Burke W, Burchard EG, Church G, Clayton EW, Eckfeldt J, Fernandez C, Fisher R, Fullerton SM, Gabriel S, James C, Jarvik G, Kittles R, Leib J, O'Donnell C, O'Rourke PP, Rodriguez LL, Romero F, Schully SD, Shuldiner AR, Shurin S, Sze RKF, Thakuria J, Wolf S, Burke G (2010) Ethical and Practical Guidelines for Reporting Genetic Research Results To Study Participants: Updated Guidelines from an NHLBI Working Group (submitted)

211. Vigneault F, Laserson U, Simen BB, Lieberman-Aiden E, Egholm M, Church GM (2010) Tracking the dynamics of a human antibody repertoire. (in revision)

210. Church GM (2010) Synthetic Biology. Nature 463: 26-32.

209. Church G (2010) How Has The Internet Changed The Way You Think?. Edge World Question (Jan 2010).

208. Jewett MC, Church GM (2010) In vitro integration of ribosomal RNA synthesis, ribosome self-assembly and protein synthesis. Nature (in revision).

207. Thakuria JV, Ball MP*, Clegg T*, Rosenbaum AM*, Wu X*, Zaranek AW*, Angrist M, Berry GT, Bhak J, Browning MF, Callow MJ, Chou MF, Chung WK, Gerald Cox G,Douglas SM, Ge D, Ho Ghang H, Gore A, Hulick P, Kim BC, Kim JI, Kim T, Lee MS, Lee S, Li Z, Nilsen GB, Rienhoff HY, Robasky K, Shianna K, Wheeler MT, Yang JL, Yang L, Aach J, Ashley EA, Drmanac R, Kim SJ, Li JB, Murray M, Quake R, Seidman CE, Seo JS, Zhang K, Rehm H, Church GM (2010) Clinical Analysis of Public Genomes. (in revision)

206. Drmanac R, Burns NL, Callow MJ, Carnevali P, Dahl F, Fernandez A, Halpern AL, Kermani BG, Nazarenko I, Nilsen GB, Pant KP, Sparks AB, Staker B, Yeung G, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert J, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Shananhovich V, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Wu X, Zaranek AW, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG,Church GM, Reid CA (2009) Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays. Science 2010 Jan 1;327(5961):78-81. Epub 2009 Nov 5;Supplement.

205. Sommer MO, Dantas G, Church GM. (2009) Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora Science Aug 28; 325 (5944) 1128 - 1131

204. Friedland AE, Lu TK, Wang X, Shi D, Church GM, Collins J (2009) Synthetic Gene Networks that Count. Science. Jun 14; 324(5931):1199-202.

203. Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature. Jul 26; 460(7257):894-8. PMID: 19633652

202a. Dietz H, Douglas SM, Shih WH.(2009) Folding DNA into twisted and curved nanoscale shapes. Science. Aug 7; 325(5941):725-30.

202. Li JB, Levanon EY, Yoon J-K, Aach J, Xie B, LeProust E, Zhang K, Gao Y, Church GM (2009) Genome-wide Identification of Human RNA Editing Sites by Massively Parallel DNA Capturing and Sequencing. Science. Jun 14; 324(5931):1210-3.

201. Kim JI, Ju YS, Park HS, Kim S, Lee S, Yi JH, Mudge J, Miller NA, Hong D, Bell CJ, Kim HS, Chung IS, Seo SH, Yun JY, Woo HN, Lee H, Suh D, Lee S, Park H, Kim JY, Gokcumen O, Mills RE, Zaranek AW, Thakuria J, Wu X, Kim RW, Huntley JJ, Luo S, Schroth GP, Wu TD, Yang KS, Kim H, Church GM, Lee C, Kingsmore SF, Seo JS (2009) A highly annotated whole genome sequence of a Korean Individual. Nature Jul 8; PMID: 19587683.

200a. Douglas SM, Dietz H, Liedl T, Hogberg B, Graf F, Shih WM (2009) Self-assembly of DNA into nanoscale three-dimensional shapes. Nature May 21; 459(7245):414-8.

200. Church G (2009) The Genome Generation Newsweek (Dec).

199. Lunshof JE, Bobe J, Aach J, Angrist M, Thakuria JV, Vorhaus DB, Hoehe MR, Church GM. (2010) Personal genomes in progress: from the human genome project to the personal genome project. Dialogues Clin Neurosci. 2010;12(1):47-60. PMID: 20373666

198a. Guo JU, Ma DK, Mo H, Ball MP, Jang MH, Bonaguidi MA, Balazer JA, Eaves HL, Xie B, Ford E, Zhang K, Ming GL, Gao Y, Song H (2009) Neuronal activity modifies DNA methylation landscape in the adult brain. (submitted)

198. Prisic S, Dankwa S, Schwartz D, Chou M, Locasale JW, Kang CM, Bemis G, Church G, Steen H, Husson RN. Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases. PNAS Apr 20;107(16):7521-6. PMID: 20368441

197. P3G Consortium, Church G, Heeney C, Hawkins N, de Vries J, Boddington P, Kaye J, Bobrow M, Weir B. Public access to genome-wide data: five views on balancing research with privacy and protection. PLoS Genet. 2009 Oct; 5(10):e1000665.

196. Sullivan GJ, Hay DC, Park IH, Fletcher J, Hannoun Z, Payne CM, Dalgetty D, Black JR, Ross J, Samuel K, Wang G, Daley GQ, Lee JH, Church GM, Forbes SJ, Iredale JP, Wilmut I (2010) Generation of Functional Human Hepatic Endoderm from Human iPS cells. Hepatology Jan;51(1):329-35.

195. Sommer MOA, Church GM, Dantas G (2010) A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion. Molecular Systems Biology 6:360.

194. Zaranek AW, Levanon EY, Zecharia T, Clegg T, Church GM (2010) A Survey of Genomic Traces Reveals a Common Sequencing Error, RNA Editing and DNA Editing. PLoS Genetics May 20;6(5):e1000954.

193. Fuller CW, Middendorf LR, Benner SA, Church GM, Harris T, Huang X, Jovanovich SB, Nelson JR, Schloss JA, Schwartz DC, Vezenov DV (2009) Challenges of Sequencing by Synthesis. Nature Biotech. Nov;

192. Tolonen A, Chilaka AC, Church GM (2009) Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367. Mol Microbiol Dec;74(6):1300-13.

191. Lun DS, Rockwell G, Guido NJ, Baym M, Kelner JA, Galagan JE, Church GM (2009) Large-Scale Identification of Genetic Design Strategies using Local Search. Nature EMBO MSB 5:296.

190. Khoury MJ, McBride C, Schully SD, Ioannidis JPA, Feero WG, Janssens ACJW, Gwinn M, Simons-Morton DG, Bernhardt JM, Cargill M, Chanock SJ, Church GM, Coates RJ, Collins FS, Croyle RT, Davis BR, Downing GJ, DuRoss A, Friedman S, Gail MH, Ginsburg GS, Green RC, Greene MH, Greenland P, Gulcher JR, Hsu A, Hudson KL, Kardia SLR, Kimmel PL, Lauer MS, Miller AM, Offit K, Ransohoff DF, Roberts S, Rasooly RS, Stefansson K, Terry SF, Teutsch SM, Trepanier A, Wanke KL, Witte JS, Xu J (2009) The Scientific Foundation for Personal Genomics. Genetics in Medicine Jul 16; PMID: 19617843.

189. Zhang K, Li JB, Gao Y, Egli D, Xie B, Lee JH, Aach J, LeProust E, Eggan K, Church GM (2009) Digital RNA Allelotyping Reveals Tissue-specific and Allele-specific Gene Expression in Human. Nature Methods Aug;6(8):613-8.

188. Lee J, Park IH, Gao Y, Li JB, Li Z, Daley G, Zhang K, Church GM (2009) A Robust Approach to Identifying Tissue-specific Gene Expression Regulatory Variants Using Personalized Human Induced Pluripotent Stem Cells. PLoS Genetics Nov;5(11):e1000718. PMC2766639

187. Sandgren A, 
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