Chapter 5 Visualizing cells and the csk visible Light microscopy




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Fluorophores and Fluorescent Probes


Berlman, I.B., Handbook of Fluorescence Spectra of Aromatic Molecules, Second Edition, Academic Press (1971).

Czarnik, A.W., Ed., Fluorescent Chemosensors for Ion and Molecule Recognition (ACS Symposium Series 538), American Chemical Society (1993).

Drexhage, K.H., "Structure and properties of laser dyes" in Dye Lasers, Third Edition, F.P. Schäfer, Ed., Springer-Verlag, (1990) pp. 155–200.

Giuliano, K.A., Post, P.L., Hahn, K.M. and Taylor, D.L., "Fluorescent protein biosensors: measurement of molecular dynamics in living cells," Annu Rev Biophys Biomol Struct 24, 405-434 (1995).

Green, F.J., The Sigma-Aldrich Handbook of Stains, Dyes and Indicators, Aldrich Chemical Company (1990).

Griffiths, J., Colour and Constitution of Organic Molecules, Academic Press (1976).

Haugland, R.P., "Antibody conjugates for cell biology" in Current Protocols in Cell Biology, J.S. Bonifacino, M. Dasso, J. Lippincott-Schwartz, J.B. Harford and K.M. Yamada, Eds., John Wiley and Sons (2000) pp. 16.5.1–16.5.22.

Haugland, R.P., "Spectra of fluorescent dyes used in flow cytometry," Meth Cell Biol 42, 641–663 (1994).

Hermanson, G.T., Bioconjugate Techniques, Academic Press (1996). Available from Molecular Probes (B7884, Section 23.6).

Johnson, I.D., Ryan, D. and Haugland, R.P., "Comparing fluorescent organic dyes for biomolecular labeling" in Methods in Nonradioactive Detection, G.C. Howard, Ed., Appleton and Lange (1993) pp. 47–68.

Johnson, I.D., "Fluorescent probes for living cells," Histochem J 30, 123–140 (1998).

Kasten, F.H., "Introduction to fluorescent probes: properties, history and applications" in Fluorescent and Luminescent Probes for Biological Activity, W.T. Mason, Ed., Academic Press (1993) pp. 12–33.

Krasovitskii, B.M. and Bolotin, B.M., Organic Luminescent Materials, VCH Publishers (1988).

Lakowicz, J.R., Ed., Topics in Fluorescence Spectroscopy: Probe Design and Chemical Sensing (Volume 4), Plenum Publishing (1994).

Mason, W.T., Ed., Fluorescent and Luminescent Probes for Biological Activity, Second Edition, Academic Press (1999). Available from Molecular Probes (F14944, Section 23.6).

Marriott, G., Ed., Caged Compounds (Methods in Enzymology, Volume 291), Academic Press (1998).

Tsien, R.Y., "The green fluorescent protein," Annu Rev Biochem 67, 509–544 (1998).

Waggoner, A.S., "Fluorescent probes for cytometry" in Flow Cytometry and Sorting, Second Edition, M.R. Melamed, T. Lindmo and M.L. Mendelsohn, Eds., Wiley-Liss (1990) pp. 209–225.

Wells, S. and Johnson, I., "Fluorescent labels for confocal microscopy" in Three-Dimensional Confocal Microscopy: Volume Investigation of Biological Systems, J.K. Stevens, L.R. Mills and J.E. Trogadis, Eds., Academic Press (1994) pp. 101–129.

Fluorescence Microscopy


Allan, V., Ed., Protein Localization by Fluorescence Microscopy: A Practical Approach, Oxford University Press (1999).

Andreeff, M. and Pinkel, D., Eds., Introduction to Fluorescence In Situ Hybridization: Principles and Clinical Applications, John Wiley and Sons (1999).

Conn, P.M., Ed., Confocal Microscopy (Methods in Enzymology, Volume 307), Academic Press (1999).

Denk, W. and Svoboda, K., "Photon upmanship: why multiphoton imaging is more than a gimmick," Neuron 18, 351–357 (1997).

Diaspro, A., Ed., Confocal and Two-Photon Microscopy: Foundations, Applications and Advances, John Wiley and Sons (2001).

Goldman, R.D. and Spector, D.L., Eds., Live Cell Imaging: A Laboratory Manual, Cold Spring Harbor Laboratory Press (2004).

Herman, B., Fluorescence Microscopy, Second Edition, BIOS Scientific Publishers (1998).

Inoué, S. and Spring, K.R., Video Microscopy, Second Edition, Plenum Publishing (1997).

Matsumoto, B., Ed., Cell Biological Applications of Confocal Microscopy, Second Edition (Methods in Cell Biology, Volume 70), Academic Press (2003).

Michalet, X., Kapanidis, A.N., Laurence, T., Pinaud, F., Doose, S., Pflughoefft, M. and Weiss S., "The power and prospects of fluorescence microscopies and spectroscopies," Annu Rev Biophys Biomolec Struct 32, 161–182 (2003).

Murphy, D.B., Fundamentals of Light Microscopy and Electronic Imaging, John Wiley and Sons (2001). Available from Molecular Probes (F24840, Section 23.6).

Pawley, J.B., Ed., Handbook of Biological Confocal Microscopy, Second Edition, Plenum Publishing (1995).

Paddock, S., Ed., Confocal Microscopy (Methods in Molecular Biology, Volume 122), Humana Press (1998). Available from Molecular Probes (C14946, Section 23.6).

Periasamy, A., Ed., Methods in Cellular Imaging, Oxford University Press (2001).

Rizzuto, R., and Fasolato, C., Eds., Imaging Living Cells, Springer-Verlag (1999).

Sheppard, C.J.R. and Shotton, D.M., Confocal Laser Scanning Microscopy, BIOS Scientific Publishers (1997).

Stevens, J.K., Mills, L.R. and Trogadis, J.E., Eds., Three-Dimensional Confocal Microscopy: Volume Investigation of Biological Systems, Academic Press (1994).

Taylor, D.L. and Wang, Y.L., Eds., Fluorescence Microscopy of Living Cells in Culture, Parts A and B (Methods in Cell Biology, Volumes 29 and 30), Academic Press (1989).

Toomre, D. and Manstein, D.J., "Lighting up the cell surface with evanescent wave microscopy," Trends Cell Biol 11, 298–303 (2001).

Tsien, R.Y., " Imagining imaging's future," Nat Rev Mol Cell Biol 4, SS16–SS21 (2003).

Wang, X.F. and Herman, B., Eds., Fluorescence Imaging Spectroscopy and Microscopy, John Wiley and Sons (1996).

Yuste, R., Lanni, F. and Konnerth, A., Imaging Neurons: A Laboratory Manual, Cold Spring Harbor Laboratory Press (2000).

Flow Cytometry


Darzynkiewicz, Z., Crissman, H.A. and Robinson, J.P., Eds., Cytometry, Third Edition Parts A and B (Methods in Cell Biology, Volumes 63 and 64), Academic Press (2001).

Davey, H.M. and Kell, D.B., "Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses," Microbiological Rev 60, 641–696 (1996).

Gilman-Sachs, A., "Flow cytometry," Anal Chem 66, 700A–707A (1994).

Givan, A.L., Flow Cytometry: First Principles, Second Edition, John Wiley and Sons (2001).

Herzenberg, L.A., Parks, D., Sahaf, B., Perez, O., Roederer, M. and Herzenberg, L.A., "The history and future of the fluorescence activated cell sorter and flow cytometry: a view from Stanford," Clin Chem 48, 1819–1827 (2002).

Jaroszeski, M.J. and Heller, R., Eds., Flow Cytometry Protocols (Methods in Molecular Biology, Volume 91), Humana Press (1997).

Lloyd, D., Ed., Flow Cytometry in Microbiology, Springer-Verlag (1993).

Melamed, M.R., Lindmo, T. and Mendelsohn, M.L., Eds., Flow Cytometry and Sorting, Second Edition, Wiley-Liss (1990).

Ormerod, M.G., Ed., Flow Cytometry: A Practical Approach, Third Edition, Oxford University Press (2000).

Robinson, J.P., Ed., Current Protocols in Cytometry, John Wiley and Sons (1997).

Shapiro, H.M., "Optical measurement in cytometry: light scattering, extinction, absorption and fluorescence," Meth Cell Biol 63, 107–129 (2001).

Shapiro, H.M., Practical Flow Cytometry, Fourth Edition, Wiley-Liss (2003).

Weaver, J.L., "Introduction to flow cytometry," Methods 21, 199–201 (2000). This journal issue also contains 10 review articles on various flow cytometry applications.

Other Fluorescence Measurement Techniques


Goldberg, M.C., Ed., Luminescence Applications in Biological, Chemical, Environmental and Hydrological Sciences (ACS Symposium Series 383), American Chemical Society (1989).

Gore, M., Ed., Spectrophotometry and Spectrofluorimetry: A Practical Approach, Second Edition, Oxford University Press (2000).

Hemmilä, I.A., Applications of Fluorescence in Immunoassays, John Wiley and Sons (1991).

Patton, W.F., "A thousand points of light: the application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics," Electrophoresis 21, 1123–1144 (2000).

Rampal, J.B., Ed., DNA Arrays: Methods and Protocols (Methods in Molecular Biology, Volume 170), Humana Press (2001). Available from Molecular Probes (D24835, Section 23.6).

Schena, M., Ed., DNA Microarrays: A Practical Approach, Oxford University Press (1999).

Schena, M., Ed., Microarray Biochip Technology, BioTechniques Press (2000).

http://www.probes.com/handbook/
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