The Centre continues to have a world-class research publication output as demonstrated by the following 276 publications including papers in Cell (1), Cancer




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Book Chapters & Books


186. Wykoff CC, Pugh CW, Harris AL, Maxwell PH and Ratcliffe PJ. The HIF pathway: implications for patterns of gene expression in cancer. In: The tumour microenvironment: causes and consequences of hypoxia and acidity. ed: Novartis Found Symp. John Wiley & Sons, Ltd. 240: 212-25; discussion 225-31, 2001


GLEADLE

177. Epstein AC, Gleadle JM, McNeill LA, Hewitson KS, O'Rourke J, Mole DR, Mukherji M, Metzen E, Wilson MI, Dhanda A, Tian YM, Masson N, Hamilton DL, Jaakkola P, Barstead R, Hodgkin J, Maxwell PH, Pugh CW, Schofield CJ and Ratcliffe PJ. C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation. Cell. 107: 43-54, 2001


188. Pugh CW, Gleadle J and Maxwell PH. Hypoxia and oxidative stress in breast cancer. Hypoxia signalling pathways. Breast Cancer Res. 3: 313-7, 2001


179. Lavista-Llanos S, Centanin L, Irisarri M, Russo DM, Gleadle JM, Bocca SN, Muzzopappa M, Ratcliffe PJ and Wappner P. Control of the hypoxic response in Drosophila melanogaster by the basic helix-loop-helix PAS protein similar. Mol Cell Biol. 22: 6842-53, 2002


181. McNeill LA, Hewitson KS, Gleadle JM, Horsfall LE, Oldham NJ, Maxwell PH, Pugh CW, Ratcliffe PJ and Schofield CJ. The use of dioxygen by HIF prolyl hydroxylase (PHD1). Bioorg Med Chem Lett. 12: 1547-50, 2002


184. Hewitson KS, McNeill LA, Riordan MV, Tian YM, Bullock AN, Welford RW, Elkins JM, Oldham NJ, Bhattacharya S, Gleadle JM, Ratcliffe PJ, Pugh CW and Schofield CJ. Hypoxia-inducible factor (HIF) asparagine hydroxylase is identical to factor inhibiting HIF (FIH) and is related to the cupin structural family. J Biol Chem. 277: 26351-5, 2002


Structural Biology

ESNOUF

  1. Balzarini J, Liekens S, Esnouf R and De Clercq E. The A167Y mutation converts the herpes simplex virus type 1 thymidine kinase into a guanosine analogue kinase. Biochemistry. 41: 6517-24, 2002




  1. Balzarini J, Sienaert R, Liekens S, Van Kuilenburg A, Carangio A, Esnouf R, De Clercq E and McGuigan C. Lack of susceptibility of bicyclic nucleoside analogs, highly potent inhibitors of varicella-zoster virus, to the catabolic action of thymidine phosphorylase and dihydropyrimidine dehydrogenase. Mol Pharmacol. 61: 1140-5, 2002


206. Brown J, Esnouf RM, Jones MA, Linnell J, Harlos K, Hassan AB and Jones EY. Structure of a functional IGF2R fragment determined from the anomalous scattering of sulfur. Embo J. 21: 1054-62, 2002


Book Chapters & Books


  1. Balzarini J, Esnouf R and De Clercq E. Nonnucleoside reverse transcriptase inhibitors. In Antiretroviral Therapy. Ed. De Clercq E. American Society for Microbiology Press, Washington DC. 63-85. 2001



FULLER

  1. Wilk T, Welker R, Rutten T, Thomas D, Kräusslich H-G and Fuller SD. R? the key to HIV capsid assembly? Virus Research. 77: 103-105, 2001




  1. Wilk T, Welker R, Krausslich H-G, Boulanger P and Fuller S. Visualization of the bipartite organization of MA in immature HIV-1. Virus Research. 77: 105-107, 2001




  1. Martin CS, Burnett RM, de Haas F, Heinkel R, Rutten T, Fuller SD, Butcher SJ and Bamford DH. Combined EM/X-ray imaging yields a quasi-atomic model of the adenovirus-related bacteriophage PRD1 and shows key capsid and membrane interactions. Structure (Camb). 9: 917-30, 2001




  1. Roseman AM, Ranson NA, Gowen B, Fuller SD and Saibil HR. Structures of unliganded and ATP-bound states of the Escherichia coli chaperonin GroEL by cryoelectron microscopy. J Struct Biol. 135: 115-25, 2001




  1. San Martin C, Huiskonen JT, Bamford JK, Butcher SJ, Fuller SD, Bamford DH and Burnett RM. Minor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid. Nat Struct Biol. 9: 756-63, 2002



GRIMES

216. Diprose JM, Grimes JM, Sutton GC, Burroughs JN, Meyer A, Maan S, Mertens PP and Stuart DI. The core of bluetongue virus binds double-stranded RNA. J Virol. 76: 9533-6, 2002


221. Bamford JK, Cockburn JJ, Diprose J, Grimes JM, Sutton G, Stuart DI and Bamford DH. Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane. J Struct Biol. 139: 103-12, 2002


220. Gilbert R, Grimes J and Stuart D. Hybrid vigour: hybrid methods in virus structure determination. Adv in Prot Chem. 2002 (in press)


JONES

  1. Maenaka K, van der Merwe PA, Stuart DI, Jones EY and Sondermann P. The human low affinity Fcgamma receptors IIa, IIb, and III bind IgG with fast kinetics and distinct thermodynamic properties. J Biol Chem. 276: 44898-904, 2001




  1. May AP and Jones EY. Sialoadhesin structure. Results Probl Cell Differ. 33: 139-51, 2001




  1. Boyton RJ, Zaccai N, Jones EY and Altmann DM. CD4 T cells selected by antigen under Th2 polarizing conditions favor an elongated TCR alpha chain complementarity-determining region 3. J Immunol. 168: 1018-27, 2002




  1. Brown J, Esnouf RM, Jones MA, Linnell J, Harlos K, Hassan AB and Jones EY. Structure of a functional IGF2R fragment determined from the anomalous scattering of sulfur. Embo J. 21: 1054-62, 2002




  1. Gadola SD, Zaccai NR, Harlos K, Shepherd D, Castro-Palomino JC, Ritter G, Schmidt RR, Jones EY and Cerundolo V. Structure of human CD1b with bound ligands at 2.3 A, a maze for alkyl chains. Nat Immunol. 3: 721-6, 2002




  1. Hon WC, Wilson MI, Harlos K, Claridge TD, Schofield CJ, Pugh CW, Maxwell PH, Ratcliffe PJ, Stuart DI and Jones EY. Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL. Nature. 417: 975-8, 2002




  1. Lang HL, Jacobsen H, Ikemizu S, Andersson C, Harlos K, Madsen L, Hjorth P, Sondergaard L, Svejgaard A, Wucherpfennig K, Stuart DI, Bell JI, Jones EY and Fugger L. A functional and structural basis for TCR cross-reactivity in multiple sclerosis. Nat Immunol. 3: 940-3, 2002



STAMMERS

  1. Nichols CE, Cocklin S, Dodds A, Ren J, Lamb H, Hawkins AR and Stammers DK. Expression, purification and crystallization of Aspergillus nidulans NmrA, a negative regulatory protein involved in nitrogen-metabolite repression. Acta Crystallogr D Biol Crystallogr. 57: 1722-5, 2001




  1. Stammers DK, Ren J, Leslie K, Nichols CE, Lamb HK, Cocklin S, Dodds A and Hawkins AR. The structure of the negative transcriptional regulator NmrA reveals a structural superfamily which includes the short-chain dehydrogenase/reductases. Embo J. 20: 6619-26, 2001




  1. Harrigan PR, Salim M, Stammers DK, Wynhoven B, Brumme ZL, McKenna P, Larder B and Kemp SD. A mutation in the 3' region of the human immunodeficiency virus type 1 reverse transcriptase (Y318F) associated with nonnucleoside reverse transcriptase inhibitor resistance. J Virol. 76: 6836-40, 2002




  1. Bird L, Chamberlain P, Stewart-Jones G, Ren J, Stuart D and Stammers D. Cloning, Expression, Purification and Crystallisation of HIV-2 Reverse Transcriptase. Protein Exp Purific. 24: 2002 (in press)




  1. Chamberlain PP, Ren J, Nichols CE, Douglas L, Lennerstrand J, Larder BA, Stuart DI and Stammers DK. Crystal structures of Zidovudine- or Lamivudine-resistant human immunodeficiency virus type 1 reverse transcriptases containing mutations at codons 41, 184, and 215. J Virol. 76: 10015-9, 2002



STUART

  1. Diprose JM, Burroughs JN, Sutton GC, Goldsmith A, Gouet P, Malby R, Overton I, Zientara S, Mertens PP, Stuart DI and Grimes JM. Translocation portals for the substrates and products of a viral transcription complex: the bluetongue virus core. Embo J. 20: 7229-39, 2001


203. Maenaka K, van der Merwe PA, Stuart DI, Jones EY and Sondermann P. The human low affinity Fcgamma receptors IIa, IIb, and III bind IgG with fast kinetics and distinct thermodynamic properties. J Biol Chem. 276: 44898-904, 2001


209. Lang HL, Jacobsen H, Ikemizu S, Andersson C, Harlos K, Madsen L, Hjorth P, Sondergaard L, Svejgaard A, Wucherpfennig K, Stuart DI, Bell JI, Jones EY and Fugger L. A functional and structural basis for TCR cross-reactivity in multiple sclerosis. Nat Immunol. 3: 940-3, 2002


208. Hon WC, Wilson MI, Harlos K, Claridge TD, Schofield CJ, Pugh CW, Maxwell PH, Ratcliffe PJ, Stuart DI and Jones EY. Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL. Nature. 417: 975-8, 2002


  1. Diprose JM, Grimes JM, Sutton GC, Burroughs JN, Meyer A, Maan S, Mertens PP and Stuart DI. The core of bluetongue virus binds double-stranded RNA. J Virol. 76: 9533-6, 2002




  1. Hatanaka H, Iourin O, Rao Z, Fry E, Kingsman A and Stuart DI. Structure of equine infectious anemia virus matrix protein. J Virol. 76: 1876-83, 2002




  1. Collins AV, Brodie DW, Gilbert RJ, Iaboni A, Manso-Sancho R, Walse B, Stuart DI, van der Merwe PA and Davis SJ. The interaction properties of costimulatory molecules revisited. Immunity. 17: 201-10, 2002




  1. Stuart AD, McKee TA, Williams PA, Harley C, Shen S, Stuart DI, Brown TD and Lea SM. Determination of the structure of a decay accelerating factor-binding clinical isolate of echovirus 11 allows mapping of mutants with altered receptor requirements for infection. J Virol. 76: 7694-704, 2002




  1. Gilbert R, Grimes J and Stuart D. Hybrid vigour: hybrid methods in virus structure determination. Adv in Prot Chem. 2002 (in press)




  1. Bamford JK, Cockburn JJ, Diprose J, Grimes JM, Sutton G, Stuart DI and Bamford DH. Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane. J Struct Biol. 139: 103-12, 2002


213. Bird L, Chamberlain P, Stewart-Jones G, Ren J, Stuart D and Stammers D. Cloning, Expression, Purification and Crystallisation of HIV-2 Reverse Transcriptase. Protein Exp Purific. 24: 2002 (in press)


214. Chamberlain PP, Ren J, Nichols CE, Douglas L, Lennerstrand J, Larder BA, Stuart DI and Stammers DK. Crystal structures of Zidovudine- or Lamivudine-resistant human immunodeficiency virus type 1 reverse transcriptases containing mutations at codons 41, 184, and 215. J Virol. 76: 10015-9, 2002


OTHERS

  1. Clifton IJ, Hsueh LC, Baldwin JE, Harlos K and Schofield CJ. Structure of proline 3-hydroxylase. Evolution of the family of 2-oxoglutarate dependent oxygenases. Eur J Biochem. 268: 6625-36, 2001




  1. Rous BA, Reaves BJ, Ihrke G, Briggs JA, Gray SR, Stephens DJ, Banting G and Luzio JP. Role of adaptor complex AP-3 in targeting wild-type and mutated CD63 to lysosomes. Mol Biol Cell. 13: 1071-82, 2002




  1. Torres J, Briggs JA and Arkin IT. Contribution of energy values to the analysis of global searching molecular dynamics simulations of transmembrane helical bundles. Biophys J. 82: 3063-71, 2002




  1. Torres J, Briggs JA and Arkin IT. Multiple site-specific infrared dichroism of CD3-zeta, a transmembrane helix bundle. J Mol Biol. 316: 365-74, 2002




  1. Torres J, Briggs JA and Arkin IT. Convergence of experimental, computational and evolutionary approaches predicts the presence of a tetrameric form for CD3-zeta. J Mol Biol. 316: 375-84, 2002




  1. Gilbert RJ. Pore-forming toxins. Cell Mol Life Sci. 59: 832-44, 2002


218. Collins AV, Brodie DW, Gilbert RJ, Iaboni A, Manso-Sancho R, Walse B, Stuart DI, van der Merwe PA and Davis SJ. The interaction properties of costimulatory molecules revisited. Immunity. 17: 201-10, 2002


206. Brown J, Esnouf RM, Jones MA, Linnell J, Harlos K, Hassan AB and Jones EY. Structure of a functional IGF2R fragment determined from the anomalous scattering of sulfur. Embo J. 21: 1054-62, 2002


207. Gadola SD, Zaccai NR, Harlos K, Shepherd D, Castro-Palomino JC, Ritter G, Schmidt RR, Jones EY and Cerundolo V. Structure of human CD1b with bound ligands at 2.3 A, a maze for alkyl chains. Nat Immunol. 3: 721-6, 2002


208. Hon WC, Wilson MI, Harlos K, Claridge TD, Schofield CJ, Pugh CW, Maxwell PH, Ratcliffe PJ, Stuart DI and Jones EY. Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL. Nature. 417: 975-8, 2002


209. Lang HL, Jacobsen H, Ikemizu S, Andersson C, Harlos K, Madsen L, Hjorth P, Sondergaard L, Svejgaard A, Wucherpfennig K, Stuart DI, Bell JI, Jones EY and Fugger L. A functional and structural basis for TCR cross-reactivity in multiple sclerosis. Nat Immunol. 3: 940-3, 2002


221. Bamford JK, Cockburn JJ, Diprose J, Grimes JM, Sutton G, Stuart DI and Bamford DH. Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane. J Struct Biol. 139: 103-12, 2002


Genetic Epidemiology

CARDON

  1. Abecasis GR, Cardon LR, Cookson WO, Sham PC and Cherny SS. Association analysis in a variance components framework. Genet Epidemiol. 21 Suppl 1: S341-6, 2001




  1. Cherny SS, Abecasis GR, Cookson WO, Sham PC and Cardon LR. The effect of genotype and pedigree error on linkage analysis: analysis of three asthma genome scans. Genet Epidemiol. 21 Suppl 1: S117-22, 2001




  1. Davis CJ, Gayan J, Knopik VS, Smith SD, Cardon LR, Pennington BF, Olson RK and DeFries JC. Etiology of reading difficulties and rapid naming: the Colorado Twin Study of Reading Disability. Behav Genet. 31: 625-35, 2001




  1. Zondervan K, Cardon L, Desrosiers R, Hyde D, Kemnitz J, Mansfield K, Roberts J, Scheffler J, Weeks DE and Kennedy S. The genetic epidemiology of spontaneous endometriosis in the rhesus monkey. Ann N Y Acad Sci. 955: 233-8; discussion 293-5, 396-406, 2002




  1. Abecasis GR, Cherny SS, Cookson WO and Cardon LR. Merlin--rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet. 30: 97-101, 2002




  1. Dawson E, Abecasis GR, Bumpstead S, Chen Y, Hunt S, Beare DM, Pabial J, Dibling T, Tinsley E, Kirby S, Carter D, Papaspyridonos M, Livingstone S, Ganske R, Lohmussaar E, Zernant J, Tonisson N, Remm M, Magi R, Puurand T, Vilo J, Kurg A, Rice K, Deloukas P, Mott R, Metspalu A, Bentley DR, Cardon LR and Dunham I. A first-generation linkage disequilibrium map of human chromosome 22. Nature. 418: 544-8, 2002




  1. Knopik VS, Smith SD, Cardon L, Pennington B, Gayan J, Olson RK and DeFries JC. Differential genetic etiology of reading component processes as a function of IQ. Behav Genet. 32: 181-98, 2002




  1. Pettipher R and Cardon LR. The application of genetics to the discovery of better medicines. Pharmacogenomics. 3: 257-63, 2002




  1. Willcutt EG, Pennington BF, Smith SD, Cardon LR, Gayan J, Knopik VS, Olson RK and DeFries JC. Quantitative trait locus for reading disability on chromosome 6p is pleiotropic for attention-deficit/hyperactivity disorder. Am J Med Genet. 114: 260-8, 2002


269. Zondervan KT, Cardon LR and Kennedy SH. What makes a good case-control study?: Design issues for complex traits such as endometriosis. Hum Reprod. 17: 1415-23, 2002


  1. Kirk KM and Cardon LR. The impact of genotyping error on haplotype reconstruction and frequency estimation. Eur J Hum Genet. 10: 616-22, 2002




  1. Marchini J and Cardon L. Discussion of the paper by Nicholson et al. J Roy Stat Soc (B). 64: 1-21, 2002


267. Zondervan K, Cardon L and Kennedy S. The genetic epidemiology of endometriosis - Development of a website for the aggregation of global evidence. Fertility and Sterility. 78: 777-781, 2002


  1. Cardon L and Palmer L. Wagging the dog? Population stratification and spurious allelic association. The Lancet. 2002 (in press)


4. Fisher SE*, Francks C*, Marlow AJ, MacPhie IL, Newbury DF, Cardon LR, Ishikawa-Brush Y, Richardson AJ, Talcott JB, Gayan J, Olson RK, Pennington BF, Smith SD, DeFries JC, Stein JF and Monaco AP. Independent genome-wide scans identify a chromosome 18 quantitative-trait locus influencing dyslexia. Nat Genet. 30: 86-91, 2002 (*Joint 1st authors)


113. van Heel DA, Udalova IA, De Silva AP, McGovern DP, Kinouchi Y, Hull J, Lench NJ, Cardon LR, Carey AH, Jewell DP and Kwiatkowski D. Inflammatory bowel disease is associated with a TNF polymorphism that affects an interaction between the OCT1 and NF(-kappa)B transcription factors. Hum Mol Genet. 11: 1281-9, 2002


163. Wiltshire S, Frayling TM, Hattersley AT, Hitman GA, Walker M, Levy JC, O'Rahilly S, Groves CJ, Menzel S, Cardon LR and McCarthy MI. Evidence for linkage of stature to chromosome 3p26 in a large U.K. Family data set ascertained for type 2 diabetes. Am J Hum Genet. 70: 543-6, 2002


112. van Heel DA, McGovern DP, Cardon LR, Dechairo BM, Lench NJ, Carey AH and Jewell DP. Fine mapping of the IBD1 locus did not identify Crohn disease-associated NOD2 variants: Implications for complex disease genetics. Am J Med Genet. 111: 253-9, 2002


161. Wiltshire S, Cardon LR and McCarthy MI. Evaluating the results of genomewide linkage scans of complex traits by locus counting. Am J Hum Genet. 71: 1175-82, 2002

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