Appendix Bibliography (list of all articles cited and what chapter cited in)




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Appendix 2. Bibliography (list of all articles cited and what chapter cited in)




Abramson JH, Gahlinger PM. (2001). Computer Programs for Epidemiologists: PEPI Version

4.0. Salt Lake City, UT, Sagebrush Press. {cited in: Ch 2-4, 2-8, 3-13, 4-1}


Agresti A. (1990). Categorical Data Analysis. New York, John Wiley & Sons. {cited in: Ch 2-4,

4-1}


Aiken, L. S., & West, S. G. (1991). Multiple Regression: Testing and Interpreting Interactions.

Newbury Park, CA: Sage Publications. {cited in: Ch 5-8}


Aickin M, Gensler H. (1996). Adjusting for multiple testing when reporting research results: the

Bonferroni vs Holm methods. Am J Public Health 86:726-728. {cited in: Ch 2-8}


Alfie J, Waisman GD, Galarza CR, Cámera MI. (1999). Contribution of stroke volume to the

change in pulse pressure pattern with age. Hypertension 34[part 2]:808-812. {cited in: Ch

5-1}


Altman DG. (1991). Practical Statistics for Medical Research. New York, Chapman &

Hall/CRC. {cited in: Ch 1-9, 2-4, 2-6, 2-8, 2-19, 3-9, 3-10, 5-3, 5-6, 5-15}


Altman DG. (1994). The scandal of poor medical research. BMJ 308:283-284. {cited in: Ch 3-4}


Altman DG, Lausen B, Sauerbrei W, Schumacher M. (1994). Dangers of using “optimal”

cutpoints in the evaluation of prognostic factors. J National Cancer Institute 86(11):829-

835. {cited in: Ch 5-14}


Altman DG, Bland JM. (1983). Measurement in medicine: the analysis of method comparison

studies. Statistician 1983;32(3):307-317. {cited in: Ch 2-17}


Altman DG, Gore SM, Gardner MJ, Pocock SJ. (1983). Statistical guidelines for contributors to

medical journals. Br Med J 286:1489-93.


Altman DG, Royston P. (2000). What do we mean by validating a prognostic model? Statist Med

19:453-473. {cited in: Ch 5-14}


Altman DG, Schulz KF, Moher D, et al. (2001). The revised CONSORT statement for reporting

randomized trials: explanation and elaboration. Ann Intern Med 134(8):663-694. {cited

in: Ch 3-1}


Ammann, R.A. (2004). Defibrotide for hepatic VOD in children: exact statistics can help! Bone

Marrow Transplantation 34: 277-278. {cited in: Ch 5-6}

_____________________


Source: Stoddard GJ. Biostatistics and Epidemiology Using Stata: A Course Manual [unpublished manuscript] University of Utah

School of Medicine, 2011. http://www.ccts.utah.edu/biostats/?pageId=5385


Anscombe FJ. (1973). Graphs in statistical analysis. The American Statistician 27:17-21. {cited

in: Ch 5-11}


Austin PC, Ghali WA, Tu JV. (2003). A comparison of several regression models for analysing

cost of CABG surgery. Statist Med 22:2799-2815. {cited in: Ch 5-22}


Austin PC, Tu JV, Daly PA, Alter DA. (2005). Tutorial in biostatistics: the use of quantile

regression in health care research: a case study examining gender differences in the

timeliness of thrombolytic therapy. Stat Med 24:791-816. {cited in: Ch 5-22}


Bain LJ, Engelhardt M. (1992). Introduction to Probability and Mathematical Statistics. 2nd ed.

Pacific Grove CA, Duxbury, p. 7-8. {cited in: Ch 2-2}


Barber JA, Thompson SG. (2000). Analysis of cost data in randomized trials: an application of

the non-parametric bootstrap. Statist Med 19:3219-3236. {cited in: Ch 5-22}


Barker L, Rolka H, Rolka D, Brown C. (2001). Equivalence testing for binomial random

variables: which test to use? The American Statistician. 55(4):279-287. {cited in: Ch 2-

15}


Barker LE, Luman ET, McCauley MM, Chu SY. (2002). Assessing equivalence: an alternative

to the use of difference tests for measuring disparities in vaccination coverage. Am J

Epidemiol 156(11):1056-1061. {cited in: Ch 2-15}


Begg CB, Greenes RA. (1983). Assessment of diagnostic tests when disease verification is

subject to selection bias. Biometrics 39:207-215. {cited in: Ch 3-13, 6-4}


Bejon P, Lusingu J, Olotu A, et al. (2008). Efficacy of RTS,S/AS01E vaccine against malaria in

children 5 to 17 months of age. N Engl J Med 359(24):2521-32. {cited in: Ch 1-9, 2-

1}


Benjamini Y, Hochberg Y. (1995). Controlling the false discovery rate: a practical an powerful

approach to multiple testing. J R Statist Soc, Series B (Methodological) 57(1):289-300.

{cited in: Ch 2-8}


Benjamini Y, Yekutieli D. (2001). The control of the false discovery rate in multiple testing

under dependency. Ann Statistics 29(4):1165-1188. {cited in: Ch 2-8}


Bergstrom L, Yocum DE, Ampel NM, et al. (2004). Increased risk of coccidioidomycosis in

patients treated with tumor necrosis factor α antagonists. Arthritis & Rheumatism

50(6):1959-1966. {cited in: Ch 2-11}


Bhardwaj SS, Camacho F, Derrow A et al (2004). Statistican significance and clinical relevance:

the importance of power in clinical trials in dermatology. Arch Dermatol 40:1520-1523.

{cited in: Ch 2-5}


Blackwelder WC. (1982). “Proving the null hypothesis” in clinical trials. Control Clin Trials

3:345-53. {cited in: Ch 2-15}


Bland JM, Altman DG. (1986). Statistical methods for assessing agreement between two

methods of clinical measurement. Lancet Feb 8:307-310. {cited in: Ch 2-17}


Bland JM, Altman DG. (1994). Correlation, regression, and repeated data. BMJ 308:896. {cited

in: Ch 2-14}


Bland JM, Altman DG. (1995a). Calculating correlation coefficients with repeated observations:

Part 1—correlation within subjects. BMJ 310:446. {cited in: Ch 2-14}


Bland JM, Altman DG. (1995b). Calculating correlation coefficients with repeated observations:

Part 2—correlation between subjects. BMJ 310:633. {cited in: Ch 2-14}


Blosseld H-P, Hamerle A, Mayer KU. (1989). Event History Analysis: Statistical Theory and

Application in the Social Sciences. Hillsdale NJ, Lawrence Erlbaum Associates. {cited in:

Ch 3-5, 5-7, 5-23}


Bond TG, Fox CM. (2007). Applying the Rasch Model: Fundamental Measurement in the

Human Sciences. 2nd ed. Mahwah, NJ, Lawrence Earlbaum Associates, Publishers. {cited in: Ch 2-6}


Borenstein M. (1997). Hypothesis testing and effect size estimation in clinical trials. Ann

Allergy Asthma Immunol 78:5-16. {cited in: Ch 2-2, 2-4, 2-5, 2-13, 3-10}

Borenstein M, Rothstein H, Cohen J. (2001). SamplePower® 2.0. Chicago, SPSS Inc.

software can be purchased at http://www.spss.com {cited in: Ch 2-4, 2-5, 2-15}


Box, GEP. (1953). Non-normality and tests on variances. Biometrika 40:318-335. {cited in: Ch

5-10}


Box, GEP. (1954). Some theorems on quadratic forms applied in the study of analysis of

Variance problems, I. Effect of inequality of variance in the one-way classification.

Annals of Mathematical Statistics, 25: 290-302. {cited in: Ch 5-10, 5-22}


Bradu D, Mundlak Y. (1970). Estimation in lognormal linear models. Journal of the American

Statistical Association. 65:198-211. {cited in: Ch 5-11, 5-22}


Brady K, Pearlstein T, Asnis GM, et al. (2000). Efficacy and safety of sertraline treatment of

posttraumatic stress disorder: a randomized controlled trial. JAMA 283(14):1837-1844.

{cited in: Ch 2-1, 2-4}


Braitman LE, Rosenbaum PR. (2002). Rare outcomes, common treatments: analytic strategies

using propensity scores. Ann Intern Med 137(8):693-5. {cited in: Ch 5-27}


Breslow NE, Day NE. (1980). Statistical Methods in Cancer Research: Volume 1 – The Analysis

of Case-Control Studies. Lyon, France, Internal Agency for Research on Cancer

(IARC Scientific Publications No. 32). {cited in: Ch 2-4}


Breslow NE, Day NE. (1987). Statistical Methods in Cancer Research, Vol II: The Design and

Analysis of Cohort Studies, Lyon, France, IARC. {cited in: Ch 3-14}


Bristol DR. (1989). Sample size for constructing confidence intervals and testing hypotheses.

Statist Med 8:803-811. {cited in: Ch 2-5}


Brookhart MA, Schneeweiss S, Rothman KJ, Glynn RJ, Avorn J, Sturmer T. (2006). Variable selection for propensity score models. Am J Epidemiol 163(12):1149-56.

{cited in: Ch 5-27}


Brown KM, Kondeatis E, Vaughan RW, et al (2006). Influence of donor C3 allotype on late

renal-transplantation outcome. N Engl J Med 354;19:2014-23. {cited in: Ch 2-4}


Browne RH. (2001). Using the sample range as a basis for calculating sample size in power

calculations. The American Statistician, 55(4):293-298. {cited in: Ch 2-5}


Browner WS, Newman TB, Cummings SR, Hulley SB. (1998). Getting ready to estimate

Sample size: hypothses and Underlying principles. In Hulley SB, Cummings SR.

Designing Clinical Research: An Epidemiologic Approach. Baltimore, Williams &

Wilkins, 1988. {cited in: Ch 2-8}


Bryant D, Havey TC, Roberts R, Guyatt G. (2006). How many patients? How many limbs?

Analysis of patients or limbs in the orthopaedic literature: a systematic review. J Bone

Joint Surg 88-A(1):41-45. {cited in: Ch 5-20}


Budtz-Jørgensen E, Keiding N, Grandjean P, Weihe P. (2006). Confounder selection in

environmental epidemiology: assessment of health effects of prenatal mercury exposure.

Ann Epidemiol 17:27-35. {cited in: Ch 5-12}


Burdette WJ, Gehan EA. (1970). Planning and Analysis of Clinical Studies, Springfield

IL: Charles C. Thomas. {cited in: Ch 2-13}


Burton P, Gurrin L, Sly P. (1998). Extending the simple linear regression model to account for

correlated responses: an introduction to generalized estimating equations and multi-level

mixed modelling. Statistics in Medicine 17:1261-91. {cited in: Ch 5-19, 5-20}


Byrt T, Bishop J, Carlin JB. (1993). Bias, prevalence and kappa. J Clin Epidemiol 46(5):423-9.

{cited in: Ch 2-16}


Cahen DJ, Gouma DJ, Nio Y, et al. (2007). Endoscopic versus surgical drainage of the

Pancreatic duct in chronic pancreatitis. N Engl J Med 356(7):676-784. {cited in: Ch 2-5}


Cai J, Zeng D. (2004). Sample size/power calculation for case-cohort studies. Biometrics

60:1015-1024. {cited in: Ch 3-14}


Campbell M, Grimshaw J, Steen N, et al. (2000). Sample size calculations for cluster randomised

trials. Journal of Health Services Research & Policy 5(1):12-16. {cited in: Ch 4-1}


Cantor SB, Kattan MW. (2000). Determining the area under the ROC curve for a binary

diagnostic test. Med Decis Making 20:468-470. {cited in: Ch 6-1}


Carpenter J, Bithell J. (2000). Bootstrap confidence intervals: when, which, what? A practical

guide for medical statisticians. Statist. Med. 19:1141-1164. {cited in: Ch 2-16, 3-13, 5-

13, 5-14, 6-4}


Carpenter JP, Lexa FJ, Davis JT. (1995). Determination of sixty percent or greater carotid artery

stenosis by duplex Doppler ultrasonography. J Vasc Surg 22(6):697-705. {cited in: Ch 1-

10}


Cepeda MS, Boston R, Farrar JT, Strom BL. (2003). Comparison of logistic regression versus propensity score when the number of events is low and there are multiple confounders. Am J Epidemiol 158(3):280-7. {cited in: Ch 5-27}


Chan I. (1998). Exact tests of equivalence and efficacy with a non-zero lower bound for

comparative studies. Statistics in Medicine 17, 1403-1413. {cited in: Ch 2-15}


Charlson ME, Pompei P, Ales Kl, MacKenzie CR. (1987). A new method of classifying

prognostic comorbidity in longitudinal populations: development and validation. J

Chronic Dis. 40:373-83. {cited in: Ch 5-14}


Charlesworth DC, Likosky DS, Marrin CAS, et al. (2003). Development and validation of a

prediction model for strokes after coronary artery bypass grafting. Ann Thorac Surg

76:436-43. {cited in: Ch 1-6}


Chatterjee S, Hadi AS, Price B. (2000). Regression Analysis by Example. 3rd ed. New York,

John Wiley and Sons. {cited in: Ch 5-4, 5-12}


Chatterjee S, Hadi AS. (2006). Regression Analysis by Example. 4th ed. New York,

John Wiley and Sons. {cited in: Ch 5-11, 5-22}


Chaves SS, Gargiullo P, Zhang JX. (2007). Loss of vaccine-induced immunity to varicella over

time. N Engl J Med 356(11):1121-9. {cited in: Ch 5-12}


Cheskin LJ, Miday R, Zorich N, Filloon T. (1998). Gastrointestinal symptoms following

consumption of Olestra or regular triglyceride potato chips. JAMA 279(2):150-152. {cited

in: Ch 3-3, 3-15}


Cheung Y-B. (2003). Analysis of matched case-control data. J Clin Epidemiol 56:814. {cited in:

Ch 5-17}


Chinn S. (2001). Statistics for the European Respiratory Journal. Eur Respir J 18:393-401. {cited

in: Ch 2-5, 5-16}


Choudhury JB. (2002). Non-parametric confidence interval estimation for competing risks

analysis: application to contraceptive data. Statist. Med. 21:1129-1144. {cited in: Ch 5-7, 5-23}


Chow S-C, Liu J-P. (2000). Design and analysis of bioavailability and bioequivalence studies.

2nd edition, New York, Marcel Dekker. {cited in: Ch 2-15}


Chow S-C, Shao Jun, Wang H. (2008). Sample Size Calculations in Clinical Research. 2nd ed.

New York, Chapman & Hall/CRC. {cited in: Ch 2-5, 2-15}


Cicchetti DV, Sparrow SA. (1981). Developing criteria for establishing interrater reliability of

secific items: applications to assessment of adaptive behavior. Am J Ment Defc 86:127-

137. {cited in: Ch 2-16}


Cleves MA, Gould WW, Gutierrez RG. An Introduction to Survival Analysis Using Stata.

Revised edition. College Station, TX, Strata Press, 2004. {cited in: Ch 5-23}


Cochran WG. (1947). Some consequences when the assumptions for the analysis of variance are

not satisified. Biometrics 3:22-38. {cited in: Ch 5-10, 5-22}


Cochran WG. (1954). Some methods for strengthening the common χ2 tests. Biometrics 10:417-

451. {cited in: Ch 2-4, 3-11, 5-17}


Cohen J. (1965). Some statistical issues in psychological research. In B.B. Wolman (Ed.),

Handbook of Clinical Psychology. New York, McGraw-Hill. pp. 95-121. {cited in: Ch 2-

5, 2-15}


Cohen J. (1968). Multiple regression as a general data-analytic system. Psychological Bulletin

70:426-443. {cited in: Ch 2-6, 5-3}


Cohen J. (1988). Statistical Power Analysis for the Behavioral Sciences, 2nd ed. Hillsdale, New

Jersey. {cited in: Ch 2-5, 2-15}


Conover WJ (1980). Practical Nonparametric Statistics, 2nd ed. New York, John

Wiley & Sons, pp.165-169. {cited in: Ch 2-4}


Cook TD, Campbell DT. (1979). Quasi-Experimentation: Design & Analysis Issues for

Field Settings. Boston, Houghton Mifflin Company. {cited in: Ch 5-15}


Cooper WO, Hernandez-Diaz S, Arbogast PG, et al. (2006). Major congenital malformations

after first-trimester exposure to ACE inhibitors. NEJM 354(23):2443-2451. {cited in: Ch

3-6, 3-11}


Copas JB. (1983). Regression, prediction and shrinkage (with Discussion), Journal of the Royal

Statisticial Society, Series B, 45:311-358. {cited in: Ch 5-14}


Coviello V, Boggess M. (2004). Cumulative incidence estimation in the presence of competing

risks. The Stata Journal 4(2):103-112. {cited in: Ch 5-7, 5-23}


Cox NJ. (2004). Speaking Stata: graphing agreement and disagreement. The Stata Journal 4(3):329-349. [available free at: http://www.stata-journal.com/archives.html]

{cited in: Ch 5-15, 5-16, 5-19}


Cramér H. (1974). Mathematical Methods of Statistics. Princeton, Princeton University Press,

pp. 137-144. {cited in: Ch 2-2}


Cuchel M, Bloedon LT, Szapary PO, et al (2007). Inhibition of microsomal triglyceride transfer

protein in familial hypercholesterolemia. N Engl J Med 356(2):148-156. {cited in: Ch 2-\ 4, 5-6}


Cullen EJ, Lawless ST, Nakarni VM, et al. (1997). Evaluation of a pediatric intensive care

residency curriculum. Crit Care Med 25(11):1898-903. {cited in: Ch 5-24}


Cummings P, Rivara FP. (2003). Reporting statistical information in medical journal articles.

Arch Pediatr Adolesc Med 157:321-324. {cited in: Ch 2-13, 3-10, 3-11, 5-8}


Cummings SR, Ensrud K, Delmas PD, et al. (2010). Lasofoxifene in postmenopausal women

with osteoporosis. N Engl J Med 362(8):686-96. {cited in: Ch 2-8}


Cunningham D, Allum WH, Stenning SP et al. (2006). Perioperative chemotherapy versus

surgery alone for resectable gastroesophageal cancer. N Engl J Med 355(1):11-20. {cited

in: Ch 3-11}


Cytel. (2001). StatXact 5® Statistical Software for Exact Nonparametric Inference User Manual

Volume 2. Cambridge MA, CYTEL Software Corporation. {cited in: Ch 2-4}


Dalton ME, Bromhan DR, Ambrose CL, Osborne J, Dalton KD. (1987). Nasal absorption of

progesterone in women. Br J Obstet Gynaecol 94(1):85-8. {cited in: Ch 2-8, 5-15}


D’Agostino RB. (1972). Relation between the chi-squared and ANOVA tests for testing the

equality of k independent dichotomous populations. The American Statistician

26(3):30-32. {cited in: Ch 2-6, 5-3}


D’Agostino RB, Jr. (1998). Propensity score methods for bias reduction in the comparison of treatment to a non-randomized control group. Stat Med 17(19):2265-81.

{cited in: Ch 5-27}


Daniel WW. (1995). Biostatistics: A Foundation for Analysis in the Health Sciences. 6th ed. New

York, John Wiley & Sons. {cited in: Ch 2-4, 2-8, 5-13, 5-14}


Day RA. (1994). How to Write and Publish a Scientific Paper. 4th ed. Phoenix AZ, The Oryx

Press, pp. 4-7. {cited in: Ch 3-4}


Delgado-Rodriquez M, Llorca J. (2004). Bias. J Epidemiol Community Health 58:635-641.
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